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		 <h2 class="breadcrumbs">Regex Opuntia (beta).</h2>
<br>
<p>This tool is a pattern finder, which could be used to find repeats, structural motives, restriction sites... It compiles a query as a regular expression, and it searches either the database or a sequence against it. </p>
<br>
<div class="col-wrapper">
<form action="/cgi-bin/regex.cgi" name="form2" method="post" enctype="multipart/form-data">
<table>
  <tr>

    <td>Command</td>

    <td>
      <input type="submit" value="find">
      <input type="reset" value="reset">
    </td>
  </tr>
  <tr>
  

    <td>Sequence String<br>(FASTA Format)</td>

    <td><textarea name="sequence" rows=6 cols=61></textarea></td>
  </tr>
  <tr>
    <td>Sequence File<br>(FASTA Format)</td>
    <td><input type="file" name="seqFile"></td>

  </tr>
  <tr>

    <td>Sequence input</td>
    <td>
       <select name="dbAll">

         <option value="mine">Sequences I provide
         <option value="opuntiaDb">All the Opuntia db
      </select>
    </td>
  </tr>
  <tr>

    <td>Database</td>
    <td>
       <select name="db">

         <option value="opuntia">Opuntia
         <option value="empty">empty
      </select>
    </td>
  </tr>


  <tr>
    <td>String to find</td>
    <td>
       <input type="text" name="query" size="30">
    </td>
</tr>
<tr>
    <td>Predefined fake MITEs</td>

    <td>
       <select name="predef">

         <option value="attccgg">attccgg
         <option value="gatt">gatt
         <option value="ññññññ">ññññññ
         <option value="a{2,4}">aRepeats
      </select>
    </td>
<tr>

    <td>Command</td>

    <td>
      <input type="submit" value="find">
      <input type="reset" value="reset">
    </td>
  </tr>
</table>
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	<li><a href ="http://srvgen.upct.es/opuntia/trf/O_fic_AllReads_raw.cap.contigs.2.7.7.80.10.50.500.summary.html">Tandem repeats</a></li>
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    <small>

        Copyright 2010 Genetics Group (Technical University of Cartagena). Send comments and feedback to <a href="mailto:julia.weiss@upct.es">julia.weiss@upct.es</a>.
    <br />
        This service runs fetch.cgi version 0.1. <a href="http://validator.w3.org/check?uri=referer">W3C HTML 4.01 compliant</a>.
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        Designed and maintained by Izaskun Mallona. 
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